I shoot stereo pretty much constantly and while I sometimes opt for a framing/composition which emphasizes the 3D effect, it usually is the exception. I just try to compose as usual and take a second (or third) shot in addition. I don't publish 90+ % of those shots online because so many people can't do the cross viewing to a necessary extent to fully enjoy it, but I regularly add a couple to my articles. And I really enjoy viewing most of the shots in stereo more even when images don't put a lot of emphasis on maximizing the effect.
Here are a couple from my latest article on the ISCO Kiptar projection lenses:
(ISCO Kiptar 2/90)
ISCO_Kiptar_90mm_F2_03.jpg
(ISCO Kiptar 2/100)
ISCO_Kiptar_100mm_F2_02.jpg
(ISCO Kiptaron 1.3/50)
ISCO_Kiptaron_50mm_F1-3_01.jpg
(ISCO Super-Kiptar 1.6/50)
ISCO_Super-Kiptar_50mm_F1-6_V1_06.jpg
ISCO_Super-Kiptar_50mm_F1-6_V1_013.jpg
(ISCO Super-Kiptar 2/70)
ISCO_Super-Kiptar_70mm_F2_07.jpg
ISCO_Super-Kiptar_70mm_F2_08.jpg
(ISCO Super-Kiptar 1.6/75)
ISCO_Super-Kiptar_75mm_F1-6_04.jpg
(Optische Werke Kiptar C 1.6/85)
OptischeWerkeGoettingen_Kiptar_C_85mm_F1-6_07.jpg
OptischeWerkeGoettingen_Kiptar_C_85mm_F1-6_01.jpg